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1

Population genomics provide insights into the evolution and adaptation of the eastern honey bee (Apis cerana)

Chen, Chao, Wang, Huihua, Liu, Zhiguang, Chen, Xiao, Tang, Jiao, Meng, Fanming, Shi, Wei, Innan, Hideki

Journal:

Molecular Biology and Evolution

Year:

2018

Language:

english

File:

PDF, 2.98 MB

english, 2018

2

Genome sequencing reveals agronomically important loci in rice using MutMap

Abe, Akira, Kosugi, Shunichi, Yoshida, Kentaro, Natsume, Satoshi, Takagi, Hiroki, Kanzaki, Hiroyuki, Matsumura, Hideo, Yoshida, Kakoto, Mitsuoka, Chikako, Tamiru, Muluneh, Innan, Hideki, Cano, Liliana

Journal:

Nature Biotechnology

Year:

2012

Language:

english

File:

PDF, 1.07 MB

english, 2012

3

Population genetic models of duplicated genes

Journal:

Year:

2009

Language:

english

File:

PDF, 725 KB

english, 2009

4

FancJ/Brip1 helicase protects against genomic losses and gains in vertebrate cells

Hiroyuki Kitao, Indrajit Nanda, Ryuichi P. Sugino, Aiko Kinomura, Mitsuyoshi Yamazoe, Hiroshi Arakawa, Michael Schmid, Hideki Innan, Kevin Hiom, Minoru Takata

Journal:

Year:

2011

Language:

english

File:

PDF, 1.43 MB

english, 2011

5

The evolution of gene duplications: classifying and distinguishing between models

Innan, Hideki, Kondrashov, Fyodor

Journal:

Nature Reviews Genetics

Year:

2010

Language:

english

File:

PDF, 413 KB

english, 2010

6

The amount and pattern of DNA polymorphism under the neutral mutation hypothesis

Fumio Tajima, Kazuharu Misawa, Hideki Innan

Journal:

Year:

1998

Language:

english

File:

PDF, 78 KB

english, 1998

7

Selection for more of the same product as a force to enhance concerted evolution of duplicated genes

Ryuichi P. Sugino, Hideki Innan

Journal:

Trends in Genetics

Year:

2006

Language:

english

File:

PDF, 222 KB

english, 2006

8

Evolution of complexity in miRNA-mediated gene regulation systems

Shohei Takuno, Hideki Innan

Journal:

Trends in Genetics

Year:

2008

Language:

english

File:

PDF, 192 KB

english, 2008

9

Potential of fish opsin gene duplications to evolve new adaptive functions

Jun Gojobori, Hideki Innan

Journal:

Trends in Genetics

Year:

2009

Language:

english

File:

PDF, 513 KB

english, 2009

10

Molecular population genetics

Magnus Nordborg, Hideki Innan

Journal:

Current Opinion in Plant Biology

Year:

2002

Language:

english

File:

PDF, 64 KB

english, 2002

11

mbs: modifying Hudson's ms software to generate samples of DNA sequences with a biallelic site under selection

Kosuke M Teshima, Hideki Innan

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 234 KB

english, 2009

12

Modeling evolutionary growth of a microRNA-mediated regulation system

Tetsuya Akita, Shohei Takuno, Hideki Innan

Journal:

Journal of Theoretical Biology

Year:

2012

Language:

english

File:

PDF, 1.58 MB

english, 2012

13

SIMULATION-BASED LIKELIHOOD APPROACH FOR EVOLUTIONARY MODELS OF PHENOTYPIC TRAITS ON PHYLOGENY

Nobuyuki Kutsukake, Hideki Innan

Journal:

Year:

2012

Language:

english

File:

PDF, 1.01 MB

english, 2012

14

QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations

Takagi, Hiroki, Abe, Akira, Yoshida, Kentaro, Kosugi, Shunichi, Natsume, Satoshi, Mitsuoka, Chikako, Uemura, Aiko, Utsushi, Hiroe, Tamiru, Muluneh, Takuno, Shohei, Innan, Hideki, Cano, Liliana M., Kam

Journal:

The Plant Journal

Year:

2013

Language:

english

File:

PDF, 726 KB

english, 2013

15

Meiotic recombination cold spots in chromosomal cohesion sites

Ito, Masaru, Kugou, Kazuto, Fawcett, Jeffrey A., Mura, Sachiko, Ikeda, Sho, Innan, Hideki, Ohta, Kunihiro

Journal:

Year:

2014

Language:

english

File:

PDF, 3.14 MB

english, 2014

16

The role of gene conversion in preserving rearrangement hotspots in the human genome

Fawcett, Jeffrey A., Innan, Hideki

Journal:

Trends in Genetics

Year:

2013

Language:

english

File:

PDF, 554 KB

english, 2013

17

Confounding Factors in HGT Detection: Statistical Error, Coalescent Effects, and Multiple Solutions

Than, Cuong, Ruths, Derek, Innan, Hideki, Nakhleh, Luay

Journal:

Journal of Computational Biology

Year:

2007

Language:

english

File:

PDF, 1.51 MB

english, 2007

18

Evaluating the performance of neutrality tests of a local community using a niche-structured simulation model

Takeuchi, Yayoi, Innan, Hideki

Journal:

Year:

2014

Language:

english

File:

PDF, 1019 KB

english, 2014

19

Molecular Evolutionary Routes That Lead to Innovations

Brunet, Frédéric, Innan, Hideki, Liao, Ben-Yang, Wang, Wen

Journal:

International Journal of Evolutionary Biology

Year:

2012

Language:

english

File:

PDF, 40 KB

english, 2012

20

Artificial selection for a green revolution gene during japonica rice domestication

Kenji Asano, Masanori Yamasaki, Shohei Takuno, Kotaro Miura, Satoshi Katagiri, Tomoko Ito, Kazuyuki Doi, Jianzhong Wu, Kaworu Ebana, Takashi Matsumoto, Hideki Innan, Hidemi Kitano, Motoyuki Ashikari a

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 1.39 MB

english, 2011

21

A statistical test for the difference in the amounts of DNA variation between two populations

INNAN, HIDEKI, TAJIMA, FUMIO

Journal:

Genetics Research

Year:

2002

Language:

english

File:

PDF, 474 KB

english, 2002

22

The effect of selection on the amounts of nucleotide variation within and between allelic classes

INNAN, HIDEKI, TAJIMA, FUMIO

Journal:

Genetics Research

Year:

1999

Language:

english

File:

PDF, 382 KB

english, 1999

23

High Similarity between Distantly Related Species of a Plant SINE Family Is Consistent with a Scenario of Vertical Transmission without Horizontal Transfers

Fawcett, Jeffrey A., Innan, Hideki

Journal:

Molecular Biology and Evolution

Year:

2016

Language:

english

File:

PDF, 1.41 MB

english, 2016

24

Theories for Analyzing Polymorphism Data in Duplicated Genes

Journal:

Genes & Genetic Systems

Year:

2004

Language:

english

File:

PDF, 420 KB

english, 2004

25

DNA fingerprinting study on the intraspecific variation and the origin of Prunus yedoensis (Someiyoshino).

INNAN, Hideki, TERAUCHI, Ryohei, MIYASHITA, Naohiko T., TSUNEWAKI, Koichiro

Journal:

The Japanese Journal of Genetics

Year:

1995

File:

PDF, 1.64 MB

1995

26

Microsatellite polymorphism in natural populations of the wild plant Arabidopsis thaliana.

Innan, Hideki, Terauchi, Ryohei, Miyashita, NaohikoT

Journal:

Year:

1997

Language:

english

File:

PDF, 1.10 MB

english, 1997

27

Forward and backward evolutionary processes and allele frequency spectrum in a cancer cell population

Ohtsuki, Hisashi, Innan, Hideki

Journal:

Theoretical Population Biology

Year:

2017

Language:

english

File:

PDF, 781 KB

english, 2017

28

Coalescent framework for prokaryotes undergoing interspecific homologous recombination

Akita, Tetsuya, Takuno, Shohei, Innan, Hideki

Journal:

Year:

2018

Language:

english

File:

PDF, 1.40 MB

english, 2018

29

Evaluating the potential roles of the Gray and Extension loci in the coat coloration of Thoroughbred racing horses

SAKAMOTO, Takahiro, FAWCETT, Jeffrey A., INNAN, Hideki

Journal:

Journal of Equine Science

Year:

2017

Language:

english

File:

PDF, 877 KB

english, 2017

30

Duplication and Gene Conversion in the Drosophila melanogaster Genome

Osada, Naoki, Innan, Hideki, Schierup, Mikkel H.

Journal:

Year:

2008

Language:

english

File:

PDF, 409 KB

english, 2008

31

Population Genomics of the Fission Yeast Schizosaccharomyces pombe

Fawcett, Jeffrey A., Iida, Tetsushi, Takuno, Shohei, Sugino, Ryuichi P., Kado, Tomoyuki, Kugou, Kazuto, Mura, Sachiko, Kobayashi, Takehiko, Ohta, Kunihiro, Nakayama, Jun-ichi, Innan, Hideki, Welch, Jo

Journal:

Year:

2014

Language:

english

File:

PDF, 870 KB

english, 2014

32

Neutral and Non-Neutral Evolution of Duplicated Genes with Gene Conversion

Fawcett, Jeffrey, Innan, Hideki

Journal:

Year:

2011

Language:

english

File:

PDF, 550 KB

english, 2011

33

Neutral Theory in Cancer Cell Population Genetics

Niida, Atsushi, Iwasaki, Watal M, Innan, Hideki, Kumar, Sudhir

Journal:

Molecular Biology and Evolution

Year:

2018

Language:

english

File:

PDF, 359 KB

english, 2018

34

The Rate and Tract Length of Gene Conversion between Duplicated Genes

Mansai, Sayaka P., Kado, Tomoyuki, Innan, Hideki

Journal:

Year:

2011

Language:

english

File:

PDF, 642 KB

english, 2011

35

Special Issue: Gene Conversion in Duplicated Genes

Journal:

Year:

2011

Language:

english

File:

PDF, 46 KB

english, 2011

36

Horizontal Gene Transfer in Five Parasite Plant Species in Orobanchaceae

Kado, Tomoyuki, Innan, Hideki

Journal:

Genome Biology and Evolution

Year:

2018

Language:

english

File:

PDF, 4.02 MB

english, 2018

37

The role of gene conversion between Transposable Elements in rewiring regulatory networks

Fawcett, Jeffrey A, Innan, Hideki, Betran, Esther

Journal:

Genome Biology and Evolution

Year:

2019

Language:

english

File:

PDF, 349 KB

english, 2019

38

Population Genetics and Molecular Evolution of DNA Sequences in Transposable Elements. II. Accumulation of Variation and Evolution of a New Subfamily

Iwasaki, Watal M, Kijima, T E, Innan, Hideki, Gaut, Brandon

Journal:

Molecular Biology and Evolution

Year:

2019

Language:

english

File:

PDF, 2.14 MB

english, 2019

39

Population Genetics and Molecular Evolution of DNA Sequences in Transposable Elements. II. Accumulation of Variation and Evolution of a New Subfamily

Iwasaki, Watal M, Kijima, T E, Innan, Hideki, Gaut, Brandon

Journal:

Molecular Biology and Evolution

Year:

2019

File:

PDF, 2.14 MB

2019

40

Genetic and epigenetic Muller’s ratchet as a mechanism of frailty and morbidity during aging: a demographic genetic model

Innan, Hideki, Veitia, Reiner, Govindaraju, Diddahally R.

Journal:

Year:

2019

Language:

english

File:

PDF, 1.56 MB

english, 2019

41

The Evolutionary Dynamics of a Genetic Barrier to Gene Flow: From the Establishment to the Emergence of a Peak of Divergence

Sakamoto, Takahiro, Innan, Hideki

Journal:

Year:

2019

File:

PDF, 1.70 MB

2019

42

The Mullerâs Ratchet and Aging

Govindaraju, Diddahally R., Innan, Hideki, Veitia, Reiner A.

Journal:

Trends in Genetics

Year:

2020

File:

PDF, 749 KB

2020

43

Duplication with structural modification through extrachromosomal circular and lariat DNA in the human genome

Takahashi, Kazuki K., Innan, Hideki

Journal:

Scientific Reports

Year:

2020

File:

PDF, 2.99 MB

2020